FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index16_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 18866789 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 4794865 | 2.9374907 | 5.022959 | 2 |
| GAAGA | 4014215 | 2.5423014 | 5.1040673 | 2 |
| CTTCT | 4094140 | 2.5341547 | 5.501198 | 1 |
| CCAGG | 3894285 | 2.5253632 | 5.159556 | 1 |
| AAGAA | 4051685 | 2.5237646 | 5.1006503 | 2 |
| CCTGG | 3901180 | 2.518599 | 5.86528 | 1 |
| CTGGA | 3766440 | 2.4030304 | 8.473183 | 1 |
| TCCAG | 3660145 | 2.3240643 | 5.319696 | 2 |
| CTCCT | 3632255 | 2.28515 | 7.0443616 | 1 |
| CTGGG | 3458815 | 2.2437203 | 8.141816 | 1 |
| CAGGA | 3434115 | 2.2007775 | 5.442743 | 1 |
| CTTCA | 3523915 | 2.1909325 | 5.599419 | 1 |
| CTCCA | 3425215 | 2.164509 | 7.443969 | 1 |
| CCCAG | 3334145 | 2.151802 | 6.909884 | 1 |
| CAGAA | 3322735 | 2.0943239 | 5.209675 | 1 |
| CTCTG | 3182285 | 2.0116658 | 6.361703 | 1 |
| CTGGC | 2895850 | 1.8695587 | 5.1391454 | 1 |
| CTGAA | 2941540 | 1.8458219 | 5.515361 | 1 |
| TGGAA | 2925810 | 1.8447582 | 5.1250687 | 2 |
| CTCAG | 2723540 | 1.7293528 | 6.1063285 | 1 |
| CTTTG | 2744020 | 1.7066168 | 5.082678 | 1 |
| CTTGG | 2579420 | 1.6383895 | 5.35372 | 1 |